Best Shopify Quickbooks Integration Apps in 2025

Effortlessly manage your Shopify business's finances and optimize tax deductions with QuickBooks Online accounting. Integrate seamlessly with QuickBooks Connector, syncing Shopify and QuickBooks Online for streamlined bookkeeping. Track income, expenses, and inventory effortlessly, saving valuable time and ensuring accurate financial records.

Key Features:

• Automated Accounting: Say goodbye to manual data entry. QuickBooks Connector automates the accounting process, saving you time and reducing errors.
• Efficient Sales Tracking: Easily send sales data to your books, ensuring your income is accurately recorded and maximizing your tax deductions.
• Inventory Management: Keep a close eye on your inventory. QuickBooks Connector allows you to track inventory levels with ease, ensuring you never run out of stock.
• Project Profitability: Monitor project profitability seamlessly. Track project-related expenses and income efficiently, aiding strategic decision-making.
• Multi-Store Integration: Connect all your Shopify storefronts to QuickBooks Online. Keep a centralized view of your finances, streamlining the management of multiple stores.

Automate invoices, customer data, and product entries effortlessly. Synchronize inventory and financial data between Shopify and QuickBooks Online, enabling you to focus on growing your business while ensuring accurate financial management.

Effortless Shopify accounting made possible with A2X. Trusted by thousands of stores, this one-click solution simplifies the reconciliation process. A2X automatically posts summarized journals to your Xero, QuickBooks, or Sage ledger using the invoice API, transforming Shopify transactions into easily manageable 'invoices'.

Key Benefits:

• Tailored for Shopify: Built specifically for Shopify store accountants and bookkeepers, A2X streamlines your accounting processes.
• Perfect Reconciliation: A2X ensures flawless reconciliation, eliminating discrepancies and ensuring your financial records are accurate.
• Efficient Tidying: Say goodbye to messy books. A2X tidies up your accounts, making your financial data organized and comprehensible.
• Shopify Plus & Shopify POS Integration: Seamlessly integrate with Shopify Plus and Shopify POS systems, ensuring comprehensive coverage for all your Shopify transactions.
• Multi-Platform Support: A2X isn't limited to Shopify. It works seamlessly across various ecommerce platforms, providing multi-channel support for the most popular platforms worldwide.
• Customizable Mapping: Use A2X's standard Shopify chart of accounts or customize your mapping to align Shopify and payment gateway transactions with your chart of accounts. A2X monitors your Shopify Store, automatically detecting payouts, and posting sales and fees to your accounting ledger, saving you valuable time.

Effortlessly streamline your Shopify business with Synder, automatically syncing all sales, fees, inventory, taxes, refunds, and more with QuickBooks or Xero. Trusted by Shopify merchants and accountants, Synder ensures seamless bookkeeping by effortlessly connecting Shopify sales items, fees, taxes, and customer data with Xero, QuickBooks Online, or Desktop.

Key Features:

• Comprehensive Sync: Synder automates synchronization of sales, fees, inventory, taxes, discounts, gift cards, and shipping, ensuring accurate financial records.
• Flexible Sync Options: Choose between daily summarized entries or individual sale syncing, tailoring the sync mode to your specific needs.
• Historical Imports: Effortlessly import years of historical transactions while ensuring complete duplicates protection, maintaining data integrity.
• Multi-Channel Support: Synder is your all-in-one solution, supporting 25+ platforms and automating sales channels efficiently.

Experience seamless synchronization of sales data with QuickBooks through an automated solution. Quickbooks Bridge app offers the flexibility of individual order sync or summary sync options, ensuring effortless integration with QuickBooks Online. With Individual Orders, effortlessly export detailed data, including customer information, products, and taxes, directly to QuickBooks. Opt for automated syncing or choose manual synchronization based on your preferences.

Key Features:

• Individual Order Sync: Export comprehensive details, including customer data, products, and taxes, ensuring accurate and detailed records in QuickBooks.
• Summary Invoice Sync: Simplify reconciliation with summary invoices created by payment method, streamlining the accounting process.
• Automated Sync Process: Enjoy the convenience of automated synchronization, eliminating manual data entry and ensuring real-time accuracy.
• Easy Reconciliation: App makes reconciliation a breeze, saving you time and effort while ensuring precise financial records.

Streamline your ecommerce business with Webgility's Modern Commerce Workspace, meticulously crafted for seamless integration with QuickBooks and popular platforms like Shopify, Amazon, WooCommerce, Etsy, and more. Say goodbye to time-consuming accounting tasks and manual inventory updates. Webgility automates the recording of online orders, customers, sales tax, and fees directly into your accounting solution, eradicating the need for data entry, CSV files, and spreadsheets.

Key Benefits:

• Effortless Bookkeeping: Bid farewell to manual bookkeeping. Webgility automates the process, ensuring your financials are always up to date.
• Seamless Financial Closure: Closing your books becomes a hassle-free task, allowing you to focus on strategic aspects of your business.
• Simplified Sales Tax Filing: Webgility simplifies sales tax filing, saving you time and ensuring compliance with tax regulations.
• Effortless Compliance: Compliance with regulations is effortless with Webgility, allowing you to navigate complex requirements effortlessly.
• Collaborative Accounting: Collaborate seamlessly with your accountant, ensuring smooth communication and effective financial management.